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Program Official
Principal Investigator
Eric L Grogan
Awardee Organization

Vanderbilt University Medical Center
United States

Fiscal Year
2025
Activity Code
R01
Early Stage Investigator Grants (ESI)
Not Applicable
Project End Date

Clinical Utility of Biomarkers Driven Management of Indeterminate Pulmonary Nodules

The goal of this application is to test the clinical utility of a biomarker-informed approach to the evaluation and management of indeterminate pulmonary nodules (IPNs). The study is designed to address this major and growing unmet need given the adoption of lung cancer screening in the US and abroad and the common occurrence of incidentally identified IPNs. We have developed and validated in external cohorts a high sensitivity hs-CYFRA 21-1 biomarker assay and quantitative imaging features that together improve the current noninvasive assessment of IPNs. In this proposal we hypothesize that a prediction model that integrates clinical variables, hs-CYFRA 21-1 serum concentration, and quantitative imaging signature will show clinical utility by reducing costly and invasive procedures while shortening time to diagnosis. To test this hypothesis, we propose the following specific aims: First, we will test the clinical utility of a biomarker-informed strategy in a first of its kind randomized clinical trial of IPN management. We will enroll 440 individuals with intermediate risk IPNs (1070% risk for cancer) at four institutions with the goal of reducing the number of invasive procedures and time to diagnosis. In the control arm, participants will follow the standard of care and in the intervention arm the biomarker results, expressed as a post-test probability for lung cancer, will be given to providers and participants to inform nodule management. Second, to further our work in identifying new candidate biomarkers for better risk stratification, we will apply a workflow for evaluation of candidates and validate the best candidates for entry into a similar future trial to that proposed in Aim 1. In a set of prospectively collected specimens, evaluated retrospectively in a blinded fashion (ProBE design), we will test the improvement in diagnostic accuracy of candidate biomarkers in patients with IPNs of intermediate risk for lung cancer based on the Mayo risk model. A blood biomarker signature from Abbott laboratories will be tested alone and in combination with a validated radiomics score to determine if together they reclassify at least 20% of those at intermediate risk (10-70%) based on the Mayo risk model alone into either a lower risk (<10%) or higher risk (>70%) group. We will determine the optimal and most cost-effective Mayo model + biomarker combination or sequence needed to achieve the critical decision thresholds in the management of IPNs. At the end of this project, we will have: a) demonstrated for the first time the clinical utility of a biomarker informed approach to IPN management and acquired additional outcomes data for a larger follow-on randomized multicenter trial, b) validated the incremental diagnostic accuracy of new candidate biomarkers for the management of IPNs, and c) opened a new avenue for rapid testing of the most effective combination(s) of candidates.

Publications

  • Rowe DJ, Khalil TA, Kammer MN, Godfrey CM, Zou Y, Vnencak-Jones CL, Xiao D, Deppen S, Grogan EL. A deeper evaluation of cytokeratin fragment 21-1 as a lung cancer tumor marker and comparison of different assays. Biosensors & bioelectronics: X. 2025 May;23. Epub 2025 Feb 17. PMID: 40329987
  • Woodhouse P, Jackson L, Kammer MN, Godfrey CM, Antic S, Zou Y, Meyers P, Gawel SH, Maldonado F, Grogan EL, Davis GJ, Deppen SA. Optimizing Biomarker Models for Biologically Heterogeneous Cancers: A Nested Model Approach for Lung Cancer. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2025 May 2;34(5):788-794. PMID: 40072122
  • Paez R, Rowe DJ, Deppen SA, Grogan EL, Kaizer A, Bornhop DJ, Kussrow AK, Barón AE, Maldonado F, Kammer MN. Assessing the clinical utility of biomarkers using the intervention probability curve (IPC). Cancer biomarkers : section A of Disease markers. 2023 Oct 28: CBM230054. Epub 2023 Oct 28. PMID: 38073376
  • Kammer MN, Rowe DJ, Deppen SA, Grogan EL, Kaizer AM, Barón AE, Maldonado F. The Intervention Probability Curve: Modeling the Practical Application of Threshold-Guided Decision-Making, Evaluated in Lung, Prostate, and Ovarian Cancers. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2022 Sep 2;31(9):1752-1759. PMID: 35732292
  • Marmor HN, Kammer MN, Deppen SA, Shipe M, Welty VF, Patel K, Godfrey C, Billatos E, Herman JG, Wilson DO, Kussrow AK, Bornhop DJ, Maldonado F, Chen H, Grogan EL. Improving lung cancer diagnosis with cancer, fungal, and imaging biomarkers. The Journal of thoracic and cardiovascular surgery. 2023 Sep;166(3):669-678.e4. Epub 2022 Dec 23. PMID: 36792410
  • Xiao D, Kammer MN, Chen H, Woodhouse P, Sandler KL, Baron AE, Wilson DO, Billatos E, Pu J, Maldonado F, Deppen SA, Grogan EL. Assessing the transportability of radiomic models for lung cancer diagnosis: commercial vs. open-source feature extractors. Translational lung cancer research. 2024 Aug 31;13(8):1907-1917. Epub 2024 Aug 26. PMID: 39263016
  • Marmor HN, Jackson L, Gawel S, Kammer M, Massion PP, Grogan EL, Davis GJ, Deppen SA. Improving malignancy risk prediction of indeterminate pulmonary nodules with imaging features and biomarkers. Clinica chimica acta; international journal of clinical chemistry. 2022 Sep 1;534:106-114. Epub 2022 Jul 20. PMID: 35870539
  • Kammer MN, Lakhani DA, Balar AB, Antic SL, Kussrow AK, Webster RL, Mahapatra S, Barad U, Shah C, Atwater T, Diergaarde B, Qian J, Kaizer A, New M, Hirsch E, Feser WJ, Strong J, Rioth M, Miller YE, Balagurunathan Y, Rowe DJ, Helmey S, Chen SC, Bauza J, Deppen SA, Sandler K, Maldonado F, Spira A, Billatos E, Schabath MB, Gillies RJ, Wilson DO, Walker RC, Landman B, Chen H, Grogan EL, Barón AE, Bornhop DJ, Massion PP. Integrated Biomarkers for the Management of Indeterminate Pulmonary Nodules. American journal of respiratory and critical care medicine. 2021 Dec 1;204(11):1306-1316. PMID: 34464235
  • Lu H, Tan Z, Ko H, Naji P, Zhu R, Wang J, Huang S, Zhang YW, Zeng S. Tripartite motif-containing protein 26 promotes colorectal cancer growth by inactivating p53. Research square. 2024 Jan 10. PMID: 38260302
  • Tan Z, Ko HM, Naji P, Zhu R, Wang J, Huang S, Zhang Y, Zeng SX, Lu H. Tripartite motif-containing protein 26 promotes colorectal cancer growth by inactivating p53. Cell death and differentiation. 2025 Feb 24. Epub 2025 Feb 24. PMID: 39994352
  • Arenberg D. Integrated Biomarkers for Pulmonary Nodules: Proving What Is Possible. American journal of respiratory and critical care medicine. 2021 Dec 1;204(11):1247-1248. PMID: 34582716
  • New ML, Hirsch EA, Feser WJ, Malkoski SP, Garg K, Miller YE, Baron AE. Differences in VA and Non-VA Pulmonary Nodules: All Evaluations Are not Created Equal. Clinical lung cancer. 2023 Jul;24(5):407-414. Epub 2023 Mar 4. PMID: 37012147
  • Woodhouse P, Paez R, Meyers P, Lentz RJ, Shojaee S, Sharp K, Baldi N, Maldonado F, Grogan EL. Leveraging Artificial Intelligence as a Safety Net for Incidentally Identified Lung Nodules at a Tertiary Center. Journal of the American College of Surgeons. 2025 Apr 1;240(4):417-422. Epub 2025 Mar 17. PMID: 39803962
  • Shih A, Hsu CY, Shyr Y. Power and sample size calculation for non-inferiority trials with treatment switching in intention-to-treat analysis comparing RMSTs. Research square. 2024 Dec 12. PMID: 39711546