Skip to main content
An official website of the United States government
Program Official
Principal Investigator
Amit Singal
Awardee Organization

Ut Southwestern Medical Center
United States

Fiscal Year
2025
Activity Code
U01
Early Stage Investigator Grants (ESI)
Not Applicable
Project End Date

Precision Risk Stratification and Screening for HCC among Patients with Indeterminate Liver Nodules

Large gaps in current strategies for risk stratification and surveillance contribute to frequent late-stage detection and poor outcomes in patients with hepatocellular carcinoma (HCC). Our Translational Liver Cancer (TLC) Research Center has made important scientific contributions that directly addressed HCC risk stratification and surveillance in patients with cirrhosis. Specifically, we conducted a series of phase II and phase III biomarker studies in patients with cirrhosis to validate 1) the first blood-based biomarker for risk stratification (PLSec-AFP), 2) abbreviated MRI for HCC surveillance, and 3) two biomarker panels, GALAD and Doylestown Plus for HCC surveillance. We also conducted modeling studies to evaluate how these data can be incorporated into clinical practice, evaluating the cost-effectiveness of a precision surveillance strategy in these patients. For our TLC renewal, we leverage our infrastructure and operational expertise to similarly develop an optimized, evidence-based approach to early HCC detection in patients with indeterminate liver nodules (ILNs). Our preliminary data demonstrate that patients with ILNs have an annual HCC risk of 6-10%/year, more than double that of those with cirrhosis without ILNs; however, they experience wide variation in HCC risk and surveillance strategies – with some patients who develop HCC failing to undergo surveillance in the year prior to diagnosis and some patients undergoing repeated CT/MRI-based surveillance despite never developing HCC. Our work highlights the need for accurate risk stratification and surveillance strategies in patients with ILNs to optimize the overall value of early HCC detection programs – gaps that are directly addressed by our proposal. We will leverage our Early Detection Research Network (EDRN)-funded Clinical Validation Center for HCC to efficiently recruit a large cohort of patients with ILNs and (1) validate the effectiveness of a novel biomarkerbased risk stratification model, (2) evaluate the effectiveness of surveillance abbreviated MRI and contrast enhanced ultrasound for detecting early-stage HCC, and (3) compare the cost effectiveness of surveillance strategies including a precision screening model in patients with ILNs. Our proposal aligns with the principles of precision medicine and would maximize benefits (via early tumor detection) and minimize harms (via false positive results) for each patient, thereby optimizing the patientcenteredness, cost effectiveness, and overall value of HCC surveillance in patients with ILNs. In addition to our patient cohorts and platform of unique biomarker and imaging data, our TLC research center will contribute methodological expertise in HCC early detection, biomarker validation, and HCC imaging to trans-network projects. Overall, our proposal will transform our approach to early HCC detection in patients with ILNs by validating evidence-based and cost-effective strategies to optimize HCC risk stratification and surveillance.

Publications

  • Danpanichkul P, Suparan K, Kaeosri C, Jatupornpakdee P, Attia AM, Suenghataiphorn T, Thongpiya J, Sukphutanan B, Huang DQ, Noureddin M, Singal AG, Wijarnpreecha K, Yang JD. Global Trend of MASH-associated Liver Cancer: A Systematic Analysis From the Global Burden of Disease 2021. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. 2025 Jul;23(8):1346-1355. Epub 2024 Dec 16. PMID: 39694213
  • Suzuki H, Mishra S, Paul S, Hoshida Y. Molecular and immune landscape of hepatocellular carcinoma for therapeutic development. Journal of liver cancer. 2025 Mar;25(1):9-18. Epub 2024 Dec 6. PMID: 39639434
  • Singal AG, Yang JD, Jalal PK, Salgia R, Mehta N, Hoteit MA, Kao K, Daher D, El Dahan KS, Hernandez P, Nayak A, Kim N, Pham S, Gamez J, Troost JP, Parikh ND. Patient-Perceived Risk of Hepatocellular Carcinoma and Net Benefit of Surveillance: A Multicenter Survey Study. The American journal of gastroenterology. 2025 Apr 23;120(8):1800-1808. PMID: 40267274
  • Zhu S, Kubota N, Wang S, Wang T, Xiao G, Hoshida Y. STIE: Single-cell level deconvolution, convolution, and clustering in in situ capturing-based spatial transcriptomics. Nature communications. 2024 Aug 30;15(1):7559. PMID: 39214995
  • Aksoy M, Berger MR, Schmähl D. Effect of different diets on the ratio of plasma lipids/vitamin A and E in female Sprague-Dawley rats with MNU-induced mammary carcinomas. Archiv fur Geschwulstforschung. 1985;55(6):443-50. PMID: 4083999
  • Abedrabbo N, Lerner E, Lam E, Kadi D, Dawit H, van der Pol C, Salameh JP, Naringrekar H, Adamo R, Alabousi M, Levis B, Tang A, Alhasan A, Arvind A, Singal A, Allen B, Bartnik K, Podgórska J, Furlan A, Cannella R, Dioguardi Burgio M, Cerny M, Choi SH, Clarke C, Jing X, Kierans A, Ronot M, Rosiak G, Jiang H, Song JS, Reiner CC, Joo I, Kwon H, Wang W, Rao SX, Diaz Telli F, Piñero F, Seo N, Kang HJ, Wang J, Min JH, Costa A, McInnes M, Bashir M. Is concurrent LR-5 associated with a higher rate of hepatocellular carcinoma in LR-3 or LR-4 observations? An individual participant data meta-analysis. Abdominal radiology (New York). 2025 Apr;50(4):1533-1546. Epub 2024 Sep 27. PMID: 39333410
  • Zhang C, Yang D, Suzuki H, Chen J, Wang J, Ye M, Zhou J, Zeng Q, Bai M, Lin MJ, Lee J, Zhu H, Hoshida Y, Zeng X. Hepatocyte-specific CLSTN3B ablation impairs lipid droplet maturation and alleviates diet-induced steatohepatitis in mice. bioRxiv : the preprint server for biology. 2025 May 25. PMID: 40475430
  • Danpanichkul P, Pang Y, Suparan K, Auttapracha T, Sirimangklanurak S, Attia AM, Thimphitthaya C, Ni Law MS, Yu Z, Soliman MA, Polpichai N, Kanitthamniyom C, Kim D, Noureddin M, Singal AG, Wijarnpreecha K, Yang JD. Increased MASH-associated liver cancer in younger demographics. Hepatology communications. 2025 Jan 7;9. (1). doi: 10.1097/HC9.0000000000000629. eCollection 2025 Jan 1. PMID: 39773868
  • Rezaee-Zavareh MS, Koltsova EK, Hoshida Y, Yang JD. Primary liver cancer spectrum: current knowledge and the next steps. Hepatobiliary surgery and nutrition. 2024 Feb 1;13(1):157-160. Epub 2024 Jan 15. PMID: 38322221
  • Thrift AP, Kanwal F, Lim H, Duong H, Liu Y, Singal AG, Khaderi S, Asrani SK, Amos CI, El-Serag HB. PNPLA3, Obesity, and Heavy Alcohol Use in Cirrhosis Patients May Exert a Synergistic Increase Hepatocellular Carcinoma Risk. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. 2024 Sep;22(9):1858-1866.e4. Epub 2024 May 9. PMID: 38729396
  • Suzuki H, Fujiwara N, Singal AG, Baumert TF, Chung RT, Kawaguchi T, Hoshida Y. Prevention of liver cancer in the era of next-generation antivirals and obesity epidemic. Hepatology (Baltimore, Md.). 2025 Jan 14. Epub 2025 Jan 14. PMID: 39808821
  • Crouchet E, Schaeffer E, Oudot MA, Moehlin J, Gadenne C, Jühling F, El Saghire H, Fujiwara N, Zhu S, Akter Rasha F, Durand SC, Charlot A, Ponsolles C, Martin R, Brignon N, Del Zompo F, Meiss-Heydmann L, Parnot M, Hamdane N, Heide D, Hetzer J, Heikenwälder M, Felli E, Pessaux P, Pochet N, Zoll J, Cunniff B, Hoshida Y, Mailly L, Baumert TF, Schuster C. Targeting peroxiredoxin 2 prevents hepatocarcinogenesis in metabolic liver disease models. The Journal of clinical investigation. 2025 Sep 11;135. (21). doi: 10.1172/JCI169395. eCollection 2025 Nov 3. PMID: 40932790
  • Hsiehchen D, Beg MS, Kainthla R, Lohrey J, Kazmi SM, Khosama L, Maxwell MC, Kline H, Katz C, Hassan A, Kubota N, Siglinsky E, Pillai AK, Youssoufian H, Mockbee C, Culm K, Uhlik M, Benjamin L, Brekken RA, Ahn C, Singal AG, Zhu H, Hoshida Y, Yopp AC. The phosphatidylserine targeting antibody bavituximab plus pembrolizumab in unresectable hepatocellular carcinoma: a phase 2 trial. Nature communications. 2024 Mar 11;15(1):2178. PMID: 38467639
  • Chai W, Rich NE, Liu Y, Campos J, Quirk L, Kramer JR, Anyanwu J, Gibbons A, Loewy A, Youssef D, Malhorta R, McGhee H, Tadros M, Kanwal F, Singal AG. Barriers to Medical Care Are Frequently Reported by Patients With Cirrhosis. Alimentary pharmacology & therapeutics. 2025 Dec 27. Epub 2025 Dec 27. PMID: 41454644
  • Arvind A, Kanzaki H, Ahmed F, Fujiwara N, Hoshida Y, Singal AG. Research Communication: Serum Metabolomic Signatures Predict Tumour Recurrence After Resection or Ablation in Patients With Early-Stage Hepatocellular Carcinoma. Alimentary pharmacology & therapeutics. 2026 Feb;63(3):414-418. Epub 2025 Aug 26. PMID: 40875577
  • Jarrah M, Deodhar S, Quirk L, Al-Hasan M, Sharma A, Bhamra G, Terrell J, Kanwal F, Hoshida Y, Rich NE, Gopal P, Singal AG. Performance of GAAD and GALAD Biomarker Panels for HCC Detection in Patients with MASLD or ALD Cirrhosis. Cancers. 2025 Nov 29;17. (23). PMID: 41375033
  • Roca Suarez AA, Jühling F, Moehlin J, Mailly L, Virzì A, Brignon N, Durand SC, Oudot MA, Schaeffer E, Martin R, Meiss-Heydmann L, Bach C, Boulahtouf Z, Girard L, Osswald E, Jamey C, Brumaru D, Dali-Youcef N, Mukherji A, Saez-Palma M, Testoni B, Zoulim F, Koneru B, Fujiwara N, Hoshida Y, Felli E, Pessaux P, Tremblay ML, Parent R, Schuster C, Baumert TF, Lupberger J. Protein tyrosine phosphatase delta is a STAT3-phosphatase and suppressor of metabolic liver disease. eGastroenterology. 2025 Jan 27;3(1):e100159. doi: 10.1136/egastro-2024-100159. eCollection 2025. PMID: 40124988
  • Kono Y, Piscaglia F, Wilson SR, Medellin A, Rodgers SK, Planz V, Kamaya A, Fetzer DT, Berzigotti A, Sidhu PS, Wessner CE, Bradigan K, Kuon Yeng Escalante CM, Siu Xiao T, Eisenbrey JR, Forsberg F, Lyshchik A, CEUS LI-RADS Trial Group, Yusuf GT, Suddle A, Rafailidis VD, Mulazzani L, Granito A, Terzi E, Forgione A, Giamperoli A, Stefanini B, Radu IP, Finch L, Singal AG. Clinical impact of CEUS on non-characterizable observations and observations with intermediate probability of malignancy on CT/MRI in patients at risk for HCC. Abdominal radiology (New York). 2024 Aug;49(8):2639-2649. Epub 2024 Jun 11. PMID: 38860996
  • Singal AG, Quirk L, Boike J, Chernyak V, Feng Z, Giamarqo G, Kanwal F, Ioannou GN, Manes S, Marrero JA, Mehta N, Pillai A, Shaheen NJ, Shaukat A, Sirlin CB, Verna E, Wani S, Wilson Woods A, Yang JD, Parikh ND. Value of HCC surveillance in a landscape of emerging surveillance options: Perspectives of a multi-stakeholder modified Delphi panel. Hepatology (Baltimore, Md.). 2025 Sep 1;82(3):794-809. Epub 2024 Dec 18. PMID: 40833999
  • Louissaint J, Deng J, Tapper EB, Turer RW, Hogan TP, Yekkaluri S, Dunn P, Singal AG. Timing of Liver Imaging Result Release Is Associated with Patients with Cirrhosis Reviewing Results Prior to Providers. Applied clinical informatics. 2025 Mar;16(2):345-349. Epub 2025 Apr 16. PMID: 40239952
  • Kuon Yeng Escalante CM, Siu Xiao T, Kono Y, Piscaglia F, Wilson SR, Medellin A, Rodgers SK, Planz V, Kamaya A, Fetzer DT, Berzigotti A, Sidhu PS, Wessner CE, Bradigan K, Eisenbrey JR, Forsberg F, Lyshchik A, CEUS LI‐RADS Trial Group, Yusuf GT, Suddle A, Rafailidis VD, Mulazzani L, Granito A, Terzi E, Forgione A, Giamperoli A, Stefanini B, Radu IP, Singal AG. Inter-Reader Agreement for Contrast-Enhanced Ultrasound Liver Imaging Reporting and Data System Major Features and Final Categorization: A Subanalysis From a Prospective Multicenter Study. Journal of ultrasound in medicine : official journal of the American Institute of Ultrasound in Medicine. 2025 Feb;44(2):349-357. Epub 2024 Oct 29. PMID: 39470295
  • Perkin A, Armasu SM, Fan WZ, Yalley NN, Yan IK, Ahmed FY, Izquierdo-Sanchez L, Boix L, Rojas A, Banales JM, Reig M, Stål P, Gómez MR, Singal AG, Roberts LR, Wangensteen KJ, Berglund A, Patel T, Antwi SO. Association of Epigenetic Aging Biomarkers With Risk of MASLD-Related HCC. Liver international : official journal of the International Association for the Study of the Liver. 2026 Jan;46(1):e70464. PMID: 41316838
  • Fujiwara N, Lopez C, Marsh TL, Raman I, Marquez CA, Paul S, Mishra SK, Kubota N, Katz C, Kanzaki H, Gonzalez M, Quirk L, Deodhar S, Selvakumar P, Raj P, Parikh ND, Roberts LR, Schwartz ME, Nguyen MH, Befeler AS, Page-Lester S, Srivastava S, Feng Z, Reddy KR, Khaderi S, Asrani SK, Kanwal F, El-Serag HB, Marrero JA, Singal AG, Hoshida Y. Phase 3 Validation of PAaM for Hepatocellular Carcinoma Risk Stratification in Cirrhosis. Gastroenterology. 2025 Mar;168(3):556-567.e7. Epub 2024 Nov 8. PMID: 39521255
  • Li PJ, Tabrizian P, Daher D, Gaviria F, Ajmera V, Montalvan-Sanchez EE, Gutierrez JA, Zhou K, Delebecque F, Garcia N, Barrick B, Wong C, Nephew L, Holden J, Dave S, Schnickel GT, Rich NE, Florman SS, Sapisochin G, Yao F, Singal AG, Mehta N. A prospective multicenter validation of RETREAT for posttransplantation HCC recurrence prediction. Hepatology (Baltimore, Md.). 2025 Dec 1;82(6):1450-1460. Epub 2025 Mar 11. PMID: 40067686
  • Macdonald JK, Taylor HB, Wang M, Delacourt A, Edge C, Lewin DN, Kubota N, Fujiwara N, Rasha F, Marquez CA, Ono A, Oka S, Chayama K, Lewis S, Taouli B, Schwartz M, Fiel MI, Drake RR, Hoshida Y, Mehta AS, Angel PM. The Spatial Extracellular Proteomic Tumor Microenvironment Distinguishes Molecular Subtypes of Hepatocellular Carcinoma. Journal of proteome research. 2024 Sep 6;23(9):3791-3805. Epub 2024 Jul 9. PMID: 38980715
  • Singal AG, Quirk L, Boike J, Chernyak V, Feng Z, Giamarqo G, Kanwal F, Ioannou GN, Manes S, Marrero JA, Mehta N, Pillai A, Shaheen NJ, Shaukat A, Sirlin CB, Verna E, Wani S, Wilson Woods A, Yang JD, Parikh ND. Value of HCC surveillance in a landscape of emerging surveillance options: Perspectives of a multi-stakeholder modified Delphi panel. Hepatology (Baltimore, Md.). 2024 Dec 18. Epub 2024 Dec 18. PMID: 39699563
  • Chan SL, Sun HC, Xu Y, Zeng H, El-Serag HB, Lee JM, Schwartz ME, Finn RS, Seong J, Wang XW, Paradis V, Abou-Alfa GK, Rimassa L, Kao JH, Zhang BH, Llovet JM, Bruix J, Yip TC, Wong VW, Wong GL, Chan LL, Liu MQ, Gao Q, Shen F, Kelley RK, Cheng AL, Kurosaki M, Toyoda H, Chen WX, Murakami T, Liang P, Zucman-Rossi J, Minami Y, Miyayama S, Wang K, Man K, Hasegawa K, Li Q, Tsuchiya K, Xu L, Chew V, Chow P, Hoshida Y, Lujambio A, Ng IO, Sakamoto M, Park YN, Yau T, Kudo M, Fan J, Zhou J. The Lancet Commission on addressing the global hepatocellular carcinoma burden: comprehensive strategies from prevention to treatment. Lancet (London, England). 2025 Aug 16;406(10504):731-778. Epub 2025 Jul 28. PMID: 40744051
  • Macias RIR, Kanzaki H, Berasain C, Avila MA, Marin JJG, Hoshida Y. The Search for Risk, Diagnostic, and Prognostic Biomarkers of Cholangiocarcinoma and Their Biological and Clinicopathologic Significance. The American journal of pathology. 2025 Mar;195(3):422-436. Epub 2024 Aug 3. PMID: 39103092
  • Fujiwara N, Matsushita Y, Tempaku M, Tachi Y, Kimura G, Izuoka K, Hayata Y, Kawamura S, Eguchi A, Nakatsuka T, Sato M, Ono A, Murakami E, Tsuge M, Oka S, Hayashi A, Hirokawa Y, Watanabe M, Parikh ND, Singal AG, Marrero JA, Hoshida Y, Mizuno S, Tateishi R, Koike K, Fujishiro M, Nakagawa H. AI-based phenotyping of hepatic fiber morphology to inform molecular alterations in metabolic dysfunction-associated steatotic liver disease. Hepatology (Baltimore, Md.). 2025 Apr 22. Epub 2025 Apr 22. PMID: 40262132
  • Ma S, Alsabawi Y, Kanwal F, Duong H, Elserag L, Singal AG, Rich NE, Khaderi S, Asrani SK, El-Serag HB, Thrift AP. The Association Between Physical Activity, Sedentary Time, and Sleep with Risk of Hepatocellular Carcinoma in Patients with Cirrhosis. Digestive diseases and sciences. 2025 Nov 7. Epub 2025 Nov 7. PMID: 41203958
  • Vadivalagan C, Zhang J, Dai J, Liu S, Singal AG, Bass K, Parikh ND, Lubman DM. Integrative Analysis of Fucosylated Tetra Glycoforms in Hepatocellular Carcinoma: A NanoLC-PRM-MS/MS and Machine Learning Approach. Journal of proteome research. 2025 Dec 5;24(12):6079-6090. Epub 2025 Nov 10. PMID: 41212027
  • Kao SZ, Sangha K, Fujiwara N, Hoshida Y, Parikh ND, Singal AG. Cost-effectiveness of a precision hepatocellular carcinoma surveillance strategy in patients with cirrhosis. EClinicalMedicine. 2024 Aug 13;75:102755. doi: 10.1016/j.eclinm.2024.102755. eCollection 2024 Sep. PMID: 39234558
  • Zhang C, Yang D, Suzuki H, Dias do Vale G, Chen J, Vaidya A, Melikov K, Swisher A, Wang J, Ye M, Zhou J, Zeng Q, Bai M, Lin MJ, Lee J, Zhu H, Siegwart DJ, Hoshida Y, McDonald JG, Zeng X. Interorganelle competition for linoleic acid underlies steatotic liver pathology. bioRxiv : the preprint server for biology. 2026 Jan 11. PMID: 41542559